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CB2030

Here we store material for the Data Analysis part of the CB2030, Systems Biology course.

This project is maintained by statisticalbiotechnology

Schedule 2025

Code Day Date Time Location ID The topic of the Convocation
L1 Mon 27/10 13-15 FB42 All Introduction
L2 Thu 30/10 15-17 FB42 LK Regression Models
             
L3 Mon 03/11 14-16 FR4 LK Classification Models; Validation
C0 Wed 05/11 08-12 4V4Gul,4V6Bru All Software and Notebooks
L4 Wed 05/11 16-18 FB52 LK SVMs and Neural Networks
L5 Thu 06/11 16-18 FD5 LK Clustering
             
L6 Mon 10/11 13-15 FR4 LK Hypothesis Testing
L7 Wed 12/11 08-10 FR4 LK Multiple Testing
C1 Wed 12/11 13-17 5O1Spe,5O2Spo LK Hypothesis Testing
             
L8 Mon 17/11 10-12 FB52 LK Principal Component Analysis
L9 Wed 19/11 08-10 FB42 LK Auto Encoders
C2 Thu 20/11 08-12 5V1Grå,5V2Kar,5V3Vit LK Machine Learning
L10 Fri 21/11 13-15 FB52 LK Pathway Analysis
             
L11 Wed 26/11 08-10 FB42 AM Genome-scale metabolic models and Linear Programming
L12 Thu 27/11 15-17 FD5 AM Flux Balance Analysis
L13 Fri 28/11 13-15 FB52 AM Application of Genome-scale Metabolic Models
             
L14 Wed 03/12 08-10 FD5 AM Next-generation Genome-scale Metabolic Modeling
C3 Wed 03/12 13-17 5O1Spe,5O2Spo AM Metabolic Modelling
L15 Thu 04/12 15-17 FD5 FE Protein Expression Analysis
L16 Fri 05/12 13-15 FB52 FE The Concept of Gene Regulation
             
L17 Mon 08/12 13-15 FD5 FE Protein Expression Quantitative Trait Loci (pQTL)
C4 Thu 11/12 15-19 5O1Spe,5O2Spo FE Gene Modelling
L18 Fri 12/12 13-15 FR4 FE Seminar: Tissue Specificity and Data Annotation
             
L19 Wed 07/01 10-12 FR4 All Q&A
Exam Fri 09/01 08-12 FB51-53 All Systems Biology

We used the following codes:

ID Name
LK Lukas Käll
AM Adil Mardinoglu
FE Fredrik Edfors
KJ Krzysztof Jurdzinski
ME Markus Ekvall
MS Mengnan Shi
TS Thanadol Sutantiwanichkul
YZ Yuqi Zheng