Here we store material for the Data Analysis part of the CB2030, Systems Biology course.
This project is maintained by statisticalbiotechnology
| Code | Day | Date | Time | Location | ID | The topic of the Convocation |
|---|---|---|---|---|---|---|
| L1 | Mon | 26/10 | 13-15 | FR4 | All | Introduction |
| C0 | Wed | 28/10 | 08-12 | Orange, Grön, Brun, Vit | All | Software and Notebooks |
| L2 | Thu | 29/10 | 15-17 | M2 | LK | Regression Models |
| L3 | Fri | 30/10 | 13-15 | FD5 | LK | Classification Models; Validation |
| L4 | Wed | 04/11 | 08-10 | K1 | LK | SVMs and Neural Networks |
| L5 | Fri | 06/11 | 15-17 | D2 | LK | Clustering |
| L6 | Wed | 11/11 | 10-12 | FD5 | LK | Principal Component Analysis |
| L7 | Thu | 12/11 | 15-17 | D2 | LK | Hypothesis Testing |
| L8 | Tue | 17/11 | 13-15 | FD5 | LK | Multiple Testing |
| C1 | Wed | 18/11 | 13-17 | Gul, Spelhallen, Sporthallen | LK | Hypothesis Testing |
| L9 | Thu | 19/11 | 10-12 | K1 | SK | Single Cell 1 |
| C2 | Thu | 19/11 | 13-17 | Grön, Brun, Grå, Karmosin | LK | Machine Learning |
| L10 | Fri | 20/11 | 10-12 | D2 | SK | Single Cell 2 |
| L11 | Tue | 24/11 | 10-12 | M1 | TL | Systems genetics and genetic architecture |
| L12 | Wed | 25/11 | 13-15 | K2 | TL | Molecular effects of genetic variation : molQTLs |
| L13 | Thu | 26/11 | 13-15 | D2 | TL | Molecular effects of genetic variation : CRISPR and deep learning models |
| C3 | Fri | 27/11 | 08-12 | M1 | SK | TBD |
| L14 | Wed | 02/12 | 10-12 | FD5 | SK | Single Cell 3 |
| L15 | Thu | 03/12 | 15-17 | K1 | SK | Single Cell 4 |
| L16 | Fri | 04/12 | 10-12 | M2 | SK | Single Cell 5 |
| C4 | Mon | 07/12 | 13-17 | Gul, Spelhallen, Sporthallen | SK | TBD |
| L17 | Tue | 08/12 | 10-12 | FD5 | LK | Pathway Analysis |
| L18 | Thu | 10/12 | 10-12 | FD5 | LK | Flux Balance Analysis |
| L19 | Fri | 11/12 | 13-15 | FD5 | All | Q&A |
| Exam | Mon | 11/01 | 08-12 | FR4 (Oskar Kleins auditorium) | All | Systems Biology |
We used the following codes:
| ID | Name |
|---|---|
| LK | Lukas Käll |
| TL | Tuuli Lappalainen |
| SK | Simon Koplev |
Teaching assistants (lab-handledare): Krzysztof Jurdziński, Yuqi Zheng, Ulysse Castet, Konstantinos Antonopoulos, Anna Hensel, Amin Saeidi Kelishami, Cassandra Wivegg, Andrei Tertienko